R Packages (Maintainer, Author)
- adelie group lasso and elastic net solver for generalized linear models.
- ASSISTant for adaptive subgroup selection in group sequential trials.
- banditpam for almost linear-time k-medoids clustering.
- bcaboot for bias corrected bootstrap confidence intervals.
- clarabel an interior point conic optimization solver for LPs, QPs, SOCPs, and SDPs.
- conTree for contrast trees and boosting.
- cubature for deterministic and monte carlo numerical integration.
- CVXR is a domain specific language for expressing convex optimization problems in R.
- deconvolveR for empirical Bayes estimation strategies.
- diffcp for differentiating through cone programs, a port of the Python package of the same name.
- distcomp for open distributed computation without aggregation.
- ECOSolveR an interface to the Embedded Conic Solver in R.
- glmnet for lasso and elastic-net regularized generalized linear models.
- homomorpheR for homomorphic computations in R and privacy-preserving multiparty model fitting.
- impute imputation of missing values using K-nearest neighbors (Bioconductor).
- ipopt an R interface to the Ipopt nonlinear optimizer (GitHub).
- locfdr computes local false discovery rates.
- multiview for cooperative learning for multi-view analysis.
- openfhe.R an R interface to the OpenFHE library for fully homomorphic encryption, supporting computation directly on encrypted data.
- osqp a quadratic programming solver using the OSQP library.
- pamr for prediction analysis for microarrays.
- piqp an R interface to the proximal interior point quadratic programming solver.
- PMA for penalized multivariate analysis.
- samr for significance analysis of microarrays.
- SBCpip for predicting platelet inventory at the Stanford Blood Center.
- scip an interface to the SCIP optimization suite for mixed-integer and constraint integer programming.
- scs an interface to the splitting conic solver.
- sglr for sequential generalized likelihood ratio decision boundaries.
- sp23design for design and simulation of seamless phase II-III clinical trials.
- sparsediff an interface to the SparseDiffEngine sparse Jacobian and Hessian differentiation backend used by CVXPY.
- Uno an interface to the Uno solver for smooth nonlinearly constrained optimization.
R Packages (Contributor)
- gam for generalized additive models.
- gamsel for fitting regularization paths for generalized additive models.
- ISLR2 data sets for the book “Introduction to Statistical Learning, Second Edition.”
- mda for mixture and flexible discriminant analysis.
- RcausalEGM a general causal inference framework by encoding generative modeling.
- SLOPE for sorted L1 penalized estimation.
- softImpute for matrix completion via iterative soft-thresholded SVD.
- sparsegl for sparse group lasso.
Python Packages
- homomorphepy multi-site privacy-preserving statistics over homomorphic encryption, a Python companion to homomorpheR (PyPI).
